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A

add(T) - Method in class edu.claflin.finder.logic.PrioritySet

Allows additions of items that already has a copy within the set (determined by obj.equals(obj2) ) and their subsequent replacement if they are of lesser value than the new object as determined by the queue's comparator.

addCondition(Condition) - Method in class edu.claflin.finder.algo.ArgumentsBundle

Adds a Condition to the conditionsList.

addCondition(Condition) - Method in class edu.claflin.finder.logic.ConditionedGraph

Adds a condition to the graph.

addEdge(int, int, Object) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by {}

addEdge(String, String, Object) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by {

addEdge(Edge) - Method in class edu.claflin.finder.logic.Graph

Adds an edge to the Graph.

addEdges(List<Edge>) - Method in class edu.claflin.finder.logic.Graph

Adds a list of Edges to the graph.

addNewNode(String) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by {}

addNode(Node) - Method in class edu.claflin.finder.logic.Graph

Adds a node to the graph.

addNodes(List<Node>) - Method in class edu.claflin.finder.logic.Graph

Adds a list of nodes to the graph.

addOverride - Variable in class edu.claflin.finder.logic.PrioritySet

Boolean indicating if newer elements with a greater compare value should replace others.

addPartialGraph(List<Node>, List<Edge>) - Method in class edu.claflin.finder.logic.ConditionedGraph

Adds a partial graph to this graph.

addPartialGraph(List<Node>, List<Edge>) - Method in class edu.claflin.finder.logic.Graph

Adds a partial graph to this graph.

addPropertyChangeListener(PropertyChangeListener) - Method in class edu.claflin.finder.algo.Algorithm

Adds a PropertyChangeListener.

Algorithm - Class in edu.claflin.finder.algo

Abstraction of the algorithm classes used for finding subgraphs.

Algorithm(ArgumentsBundle) - Constructor for class edu.claflin.finder.algo.Algorithm

Public Constructor for creating an Algorithm.

algorithms - Variable in class edu.claflin.finder.algo.Bundle

The Algorithm array containing the algorithms to process graphs with.

args - Variable in class edu.claflin.finder.algo.Algorithm

The ArgumentsBundle object holding arguments for the algorithm.

ArgumentsBundle - Class in edu.claflin.finder.algo

Used to supply arguments to Algorithms in a generalized manner.

ArgumentsBundle() - Constructor for class edu.claflin.finder.algo.ArgumentsBundle

Constructs the ArgumentsBundle.

ArgumentsBundle.COMMON_ARGS - Enum in edu.claflin.finder.algo

An enumeration containing common arguments used by the program.

ascending - Variable in class edu.claflin.finder.logic.comp.EdgeWeightComparator

Indicates if the comparator should sort elements in ascending order.

assembleMap(List<CygrouperEdge>, Map) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperAssembler

assmbleNodes(List<CygrouperEdge>, Map) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperAssembler

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